* upstream/master: (353 commits)
Put some admin settings in dropdown
Add styleguide on configuration settings documentation
Remove Duplicated keys add UNIQUE index to fingerprint
Avoid autoload issue such as 'Mail::Parsers::AddressStruct'
Move appearance settings as sub tab to application settings
use rails root join
fixed a couple of errors spotted in production
Fix RangeError exceptions when referring to issues or merge requests outside of max database values
Fix bug in `WikiLinkFilter`.
Grammar and typographic changes to artifacts documentation
Tweak grammar
Small frontend code fixes and restore 8a2d88f commit
Warn about admin privilege to disable GitHub Webhooks
Listing GH Webhooks doesn't stop import process for non GH admin users
fixup! updated docs for api endpoint award emoji
Update CHANGELOG
Ensure Todos counters doesn't count Todos for projects pending delete
Add endpoints for award emoji on notes
Sort API endpoints and implement feedback
Add endpoints for Award Emoji
...
Fix RangeError exceptions when referring to issues or merge requests outside of max database values
When using #XYZ in Markdown text, if XYZ exceeds the maximum value of a signed 32-bit integer, we get an exception when the Markdown render attempts to run `where(iids: XYZ)`. Introduce a method that will throw out out-of-bounds values.
Closes#18777
See merge request !4777
When using #XYZ in Markdown text, if XYZ exceeds the maximum value of a signed 32-bit integer, we
get an exception when the Markdown render attempts to run `where(iids: XYZ)`. Introduce a method
that will throw out out-of-bounds values.
Closes#18777
1. An exception would be raised if the filter was called with an invalid
URI. Mainly because we weren't catching the `Addressable` exception.
2. This commit fixes it and adds a spec for the filter.
Implement custom notification level options


part of #12758
See merge request !4389
Ensure that group owner cannot request access to a project of their group
## What does this MR do?
It fixes two things:
- 91ad995d69e1a0f8991fd896f1d9febc109273fe Ensure that group owner cannot request access to a project of their group
- ec3ff061148d556757e7cd486cdc6083d77acf34 Ensure group/project owners can see their members' access_level (see the commit message for details)
## Are there points in the code the reviewer needs to double check?
Not really, these are pretty simple fixes.
## Why was this MR needed?
Because there was an issue created!
## What are the relevant issue numbers?
Fixes#18717.
## Does this MR meet the acceptance criteria?
- [x] CHANGELOG is not needed since the bug is only present in a 8.9 RC
- [x] Tests
- [x] Added for this feature/bug
- [x] All builds are passing
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)
See merge request !4729
Ensure Todos counters doesn't count Todos for projects pending delete
Use `TodosFinder` instead of `current_user.todos` to filter projects
pending delete on Todos counters helpers.
Counters should not reflect the number of Todos displayed on the tabs.
Fixes#18633
See merge request !4663
Disable the unlink feature for SAML connected accounts (social login).
This disables the ability to manually unlink your SAML account, if you have one connected. In certain scenarios, the only allowed login mechanism can be SAML, and if you unlink your account you will be locked out of the system (configuration dependent).
Fixes#18613
See merge request !4662
Do not check repos without push events
Reduce false positives from automatic repository checks by skipping
projects without push events.
See merge request !4684
Track method call times/counts as a single metric
This changes method call tracking so only a single metric is emitted regardless of the number of calls. This allows us to more accurately measure the total execution time of a method as well as the number of times a method is called. See 851e3ff7578973c2206628424eac3b951a3c656d for more details.
Method call tracking tracked calls individually meaning the end statistics may not always be accurate enough to get a good understanding of where time is spent.
See merge request !4754
Added API endpoint for Sidekiq Metrics.
## What does this MR do?
It adds an API endpoint to gather metrics about Sidekiq, it's jobs, queues, and processes.
## Why was this MR needed?
There was no API endpoint for Sidekiq information.
## What are the relevant issue numbers?
Fixes#7171
## Does this MR meet the acceptance criteria?
- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [x] API support added
- [x] Tests
- [x] Added for this feature/bug
- [x] All builds are passing
See merge request !4653
Previously we'd create a separate Metric instance for every method call
that would exceed the method call threshold. This is problematic because
it doesn't provide us with information to accurately get the _total_
execution time of a particular method. For example, if the method
"Foo#bar" was called 4 times with a runtime of ~10 milliseconds we'd end
up with 4 different Metric instances. If we were to then get the
average/95th percentile/etc of the timings this would be roughly 10
milliseconds. However, the _actual_ total time spent in this method
would be around 40 milliseconds.
To solve this problem we now create a single Metric instance per method.
This Metric instance contains the _total_ real/CPU time and the call
count for every instrumented method.
- As todos are created/updated inside the TodoService
we repopulate the cache just there for both pending/done todos
- Todos as mark as done from the TodosController we update cache
there too
- All the added methods are kept in the User class for cohesion
- Make it more explicit that `source` must respond to `#group` and that
`#group` must be present.
- Indent subsequent lines of a multi-line condition.
Signed-off-by: Rémy Coutable <remy@rymai.me>
Allow customising of queries used for `update_column_in_batches`
This MR makes two changes to `add_column_with_default` and `update_column_in_batches`:
1. `add_column_with_default` no longer wraps the entire set of updates in a single transaction, preventing any locks from sticking around for the duration of the entire transaction
2. `update_column_in_batches` now takes a block which can be used to customise the queries. This uses Arel as messing with raw SQL strings is a total pain
In !4381 there's a need for updating existing rows/columns in a table in batches using a custom `WHERE` condition. Without the changes in this MR this would not be possible.
See merge request !4680
Don't show 'Leave Project' to group members
## What does this MR do?
It hides the 'Leave Project' button to group members that are not explicitly a member of the project.
## Are there points in the code the reviewer needs to double check?
No.
## Why was this MR needed?
Because there was an issue opened!
## What are the relevant issue numbers?
Fixes#18724.
## Does this MR meet the acceptance criteria?
- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [x] Tests
- [x] Added for this feature/bug
- [x] All builds are passing
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)
See merge request !4739
Add sorting dropdown to tag page
## What does this MR do?
Adds a sorting dropdown to the tags page just like the one on the branches page.
## Are there points in the code the reviewer needs to double check?
No
## Why was this MR needed?
Clients were asking for this
## What are the relevant issue numbers?
Closes#14918
## Screenshots (if relevant)

See merge request !4423
Make sure that artifacts_file is nullified after removing artifacts
## What does this MR do?
Fixes a problem that `ExpireBuildArtifactsWorker` is executed for all previously removed artifacts.
## Why was this MR needed?
Currently the `Ci::Build::erase_artifacts!` doesn't ensure that data are saved to database.
The bang at end of this method lets you believe that it should do so.
This adds a missing `save` to this method.
## What are the relevant issue numbers?
None, yet.
## CHANGELOG
Since this is regression in feature introduce in RC4 no CHANGELOG entry is needed.
cc @grzesiek
See merge request !4741
Allow creating Personal Access Tokens through the website
Related to #2979
- Allow a user to create personal access tokens, and use them to authenticate
- Refactor `API::Helpers` into `API::Helpers::Core` and `API::Helpers::Authentication`
# Tasks
- [ ] #2979 (!3749) - Personal Access Tokens
- [x] Basic Implementation
- [x] Add UI to add "Personal Access Tokens"
- [x] Reload `lib/api` on every request
- [x] Respect these tokens for API requests
- [x] Just a param or a header too?
- [x] Allow revoking tokens
- [x] Expire tokens
- [x] Left bar should have a "PAT" icon
- [x] Scopes?
- [x] Copy to Clipboard
- [x] Show active/inactive tokens separately
- [x] No need to check for expired/revoked in the appropriate places
- [x] Why does regular ApplicationController check for private token?
- [x] Support non-API requests
- [x] Revert (or work on) `lib/api` eager loading
- [x] Create MR
- [x] Refactoring
- [x] Fix tests
- [x] Write more tests
- [x] Add screenshots to MR
- [x] Add description of query performance to MR
- [x] Limit the number of queries in the `personal_access_tokens` page
- [x] Wait for CI to pass
- [x] Fix merge issues in schema.rb
- [x] Assign MR to endboss
- [x] Wait for feedback
- [x] Fix feedback
- [x] Wait for CI to pass
- [x] Assign to @rspeicher
- [x] Fix @rspeicher's comments
- [x] Wait for CI to pass
- [x] Assign back to @rspeicher
- [x] Write documentation and ping @axil
- [x] Wait for Axil to respond
- [x] Assign to endboss
- [x] Address Douwe's feedback
- [x] Use the `private_token` or `authentication_token` param instead of `personal_access_token`
- [x] Ditto for the header
- [x] Assign to endboss
- [x] Make sure CI is green
- [x] Address Douwe's feedback
- [x] Don't go through the `authenticate_user_from_private_token!` method, if a private token is supplied (or combine them)
- [x] In `authenticate_user_from_personal_access_token!` don't hit DB if `token_string` is `nil`
- [x] Use `current_user.personal_access_tokens.build` in the controller
- [x] Remove the "We aren't using `personal_access_token` as the root param" comment
- [x] `No need for = "...", we can just have the Inactive ... #{...} on the next line` in the view
- [x] Render dates in a (more) human format
- [x] CSS issue with table
- [x] Don't show the tokens in the UI indefinitely
- [x] How to implement scopes? Add-on to current impl? Doorkeeper?
- [x] Wait for @DouweM's comments about scopes
- [x] Address @DouweM's second review
- [x] Try not using `native['innerHTML']`
- [x] use contexts for all "when ..."
- [x] Ensure consistency (styling) with other pages for "You don't have any tokens" message
- [x] "Actions" table column doesn't need a label
- [x] %td can be moved outside of the if/else statement
- [x] The header title should be "Profile Settings"
- [x] Can this be a `before_create`, so we don't need to use `generate`?
- [x] If it couldn't be revoked, will we show an error?
- [x] If it couldn't be saved, will we show an error?
- [x] Merge master
- [x] Update CHANGELOG entry
- [x] Add tests for form errors?
- [x] Post screenshots
- [x] Tag @jschatz1 for review
- [x] Wait for [build](https://gitlab.com/gitlab-org/gitlab-ce/commit/0dff6fd/builds) to pass
- [x] Respond to @jschatz1's comments
- [x] Hardcoded colors should be variables
- [x] Should not be allowed to chose a date in the past
- [x] Use the same table as in the Applications tab
- [x] button should say "Create Personal Access Token"
- [x] Float the revoke to the right on the `a`
- [x] Change revocation message. "Are you sure you want to revoke this certificate? This action cannot be undone."
- [x] Date stays selected and looks selected even though date is set as "never".
- [x] ~~hover on the calendar button shifts~~ (not caused by this MR - happens on `milestones#new` as well)
- [x] Don't use the panel for the created token
- [x] Use a normal flash for "Your new personal access token has been created"
- [x] Show the input (with the token) below it full width.
- [x] Put the "Make sure you save it - you won't be able to access it again." message near the input
- [x] Have the input highlight all on single click
- [x] Update screenshots
- [x] Merge master in + conflicts
- [x] Assign to @jschatz1 again
- [x] Respond to @jschatz1's comments
- [x] No button for clipboard, only link
- [x] text-danger
- [x] highlight fade on that area where the token was created
- [x] Make sure [build](https://gitlab.com/gitlab-org/gitlab-ce/commit/d754d99179f1ffe846fcc1d8e858163b39efc5dc/builds) is green
- [x] Assign to @jschatz1
- [x] Wait for [build](https://gitlab.com/gitlab-org/gitlab-ce/commit/faa0e3f7580bc38d4d12916b4589c64d6c2678a7/builds) to pass
- [x] Respond to @DouweM's feedback
- [x] move the redirect_to out of the if/else
- [x] certificate -> token
- [x] datepicker back to text field
- [x] combine the get_user_from_private_token and get_user_from_personal_access_token methods in ApplicationController
- [x] combine the get_user_from_private_token and get_user_from_personal_access_token methods in `lib/api/helpers`
- [x] don't need the new constants
- [x] Wait for [build](https://gitlab.com/gitlab-org/gitlab-ce/commit/9d7cda3ddce52baad9618466a5d00319b333be57/builds) to pass
- [ ] Wait for merge
# Screenshots




See merge request !3749
* upstream/master: (337 commits)
Update CHANGELOG for !4659
Center the header logo for all Devise emails
Add previews for all customized Devise emails
Customize the Devise `unlock_instructions` email
Customize the Devise `reset_password_instructions` email
Customize the Devise `password_change` emails
Use gitlab-git 10.2.0
Use Git cached counters on project show page
Fix indentation scss-lint errors
Added title attribute to enties in tree view Closes#18353
Banzai::Filter::ExternalLinkFilter use XPath
Reduce queries in IssueReferenceFilter
Use gitlab_git 10.1.4
Fixed ordering in Project.find_with_namespace
Fix images in emails
Banzai::Filter::UploadLinkFilter use XPath
Turn Group#owners into a has_many association
Make project_id nullable
CHANGELOG [ci skip]
CHANGELOG [ci skip]
...
When you are the last owner of a group or the owner of a project,
you don't have the :update_<source>_member / :destroy_<source>_member
abilities, but you do have the :admin_<source>_member so you should
be able to see your members access levels.
Signed-off-by: Rémy Coutable <remy@rymai.me>
Currently the RegexpError can be raised when processing next stage which leads to 500 in different places of code base.
This adds early check that regexps used in only and except are valid.